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July 2003 Volume 8 Issue 1a |
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Feline Genetics Extravaganza, July 19-20, 2003
UC Davis Genetics Laboratory
written by Donna Bass
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Lorraine Shelton and I were two of many attendees at the Feline Genetics Extravaganza held July 19 and 20 at UC Davis. Lorraine posted her notes and observations on the CFA list (and they are posted below, with my additions included in italics).
Incredible progress has been made in the field of feline genetics in the past two years! And more exciting things are to come.
The meeting began with a small, private session to brainstorm about potential projects to explore genetic susceptibility of cats to FIP. To quote Dr. Pedersen, one of the world's foremost experts in feline virology: "I was researching a feline lentivirus (FeLV) when AIDS hit and suddenly everyone was interested in my work. Now, after years of research in a feline coronavirus, suddenly SARS hits and everyone is interested in THAT research."
I didn't attend this part of the session. However, results presented at the meeting were presented during the seminar. One interesting discussion was that there are fewer cases of the wet form of FIP being seen, and more cases of the dry form of FIP. What does this mean? It seems that the wet form shows in cats with no immunity. The dry form appears in cats with partial immunity. Cats with strong immunity don't have FIP. So the fact that fewer wet forms and more dry indicates that more cats have at least partial immunity to the mutation in feline enteric coronavirus that causes FIP.
Stress increases shedding, increases mutation and increases infectivity of environment. Kittens shed 100x more virus during primary infection than adults, which may be why FECV shows up as FIP in kittens more than adults.
From discussions with breeders, there seems to be some cats that produce offspring with more susceptibility than others. When a resistant male bred to a susceptible or resistant female, there doesn't seem to be much difference in susceptibility of offspring. A susceptible male seems to produce more kittens with susceptibility.
There was discussion about the potential genetic markers/alleles that could be targeted for study for susceptibility. Because of SARS, there is more money available for coronavirus studies, so the genetics lab needs your help (and your vets!). When you have a kitten with FIP (verified through testing with blood, abdominal fluid, etc., not just titer), the researchers would like the kitten (alive is possible, but if not, immediately after death - have your vet call for details on delivering the body to the lab), and blood samples, fecal samples, etc. of siblings, parents, etc.
So just when Dr. Pedersen was entertaining thoughts of retiring... something that must NEVER be allowed to happen!... huge amounts of potential funding for FIP research is being made available. The task is finding the best way to exploit that funding for the betterment of our cats!
There are some promising hints of where we can start looking. So I expect some amazing improvements in our understanding of FIP in the next decade.
Dr. Leslie Lyon introduced the Extravaganza with a brief introduction of the motivation for holding the seminar. Her comments included:
- Duty to Communicate with Breeders
- Teaching, enforce collaboration and service
- Experience for Lab Personnel
- Future researchers and service
- Exposure for UC Davis School of Veterinary Medicine
- UCD is one of the leaders in feline genetics and veterinary medicine
- Donor opportunities - the life blood of any research organization
- Focus of the Center for Companion Animal Health
- Seminar held in response to request from CCAH among others
- Communicate with Collaborators
Meanwhile, the move of Dr. Lyon's research to UC Davis has resulted in her acquiring an important resource: hard-working, dedicated undergraduate and graduate students searching to answer genetic questions that remain unanswered in the cat fancy. This impressive group of young people has already given us some great tools, with more to follow. Their research, as well as that of other scientists in the field, were presented.
(Leslie, as an assistant professor at UCDavis is required to do teaching, research and publishing. As part of her teaching, she has undergraduates do the research that may be, at first, considered fairly straight forward. These projects usually don't take too long and don't require much funding. She also has students who are working for their masters who are looking for projects that take at least 2 years. These require funding, but may not be funded enough to provide the master's student any kind of living expenses. There are also Ph.D. students with fully funded projects (in the $50,000 range) that can take around 5 years to complete. These are the researchers who presented many of the project descriptions listed below.)
Specifically: (Note: these are not listed in the order in which they appeared in the seminar.)
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| 1. | They have developed a genetic test for Siamese, Burmese, and Tonkinese colored cats and carriers of these alleles. They've located the gene sequence change that appears to be the pointed colors. They need samples from pointed cats of all breeds, to make sure that the change they located isn't related to a particular breed. Bucal swabs (those cute little brushes) from all sorts of pointed cats, from all the breeds, will help clarify the issue.
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| 2. | They have developed a genetic test for chocolate/chestnut and can determine carriers of these colors. A candidate gene for "inhibitor" is being investigated.
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| 3. | THE POLYCYSTIC KIDNEY DISEASE GENE HAS BEEN FOUND (high level of confidence)! Unfortunately it will still be quite a while before there is a test, as this is a large gene and sequencing will take a great deal of time. From my notes, a particular allele is present in every cat affected with PKD. However, it is also present in some cats that do not appear to be affected. Thus, more research needs to be done to narrow down the gene/marker that can be more definitive.
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| 4. | Hypertrophic cardiomyopathy: They have 10 candidate genes to check. Three have been ruled out so far. One gene/protein seems potentially very promising right now (myosin binding protein-C). HCM is an adult onset disease. It may be "programmed" to develop, but isn't apparent at birth. It is not caused by developmental abnormalities or insults to heart muscles. The HCM in Maine Coons appears to be an autosomal dominant with incomplete penetrance [shows up differently in each cat - can appear as silent carrier]. There are some potential candidate genes but it is time consuming, the feline genome isn't mapped, and it's expensive.
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| 5. | Two candidate genes for the Burmese Head Defect are being investigated. This study now has NIH funding which will help the project move forward. Sonic Hedgehog is a small gene and it would be VERY good news if that gene ends up being THE ONE. The other possibility for this defect are called HOX clusters which are large and extremely complex. The SHH is linked to human facial deformities and is in one location. The HOX is spread out. BTW, there was no explanation for SHH being called Sonic Hedgehog, but it is a cute name.
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| 6. | The orange gene on the x-chromosome hasn't been found yet... but it ISN'T MC1-R, as every geneticist in the world has always assumed it was! Unlike every other "red" in the world - horses, dogs, humans, birds, etc.
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| 7. | From the National Cancer Institute, the gene for agouti vs. non-agouti (tabby vs. non-tabby) has been found. Theoretically, we now have a test for whether red/cream cats are true tabbies or not.
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| 8. | Feline lymphosarcoma research is continuing, but more affected cats are needed. Biopsy tissue for research needs to be obtained BEFORE these cats get chemotherapy. It seems that this is more prevalent in Oriental Shorthairs and American Siamese. There was some discussion about where it might have come from - perhaps from domestic shorthair used for OSH creation.
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| 9. | Dr. Susan Little presented early results from her breed specific reproductive data collection projects. Definitely seeing differences between the breeds on birth weights, congential defects, dystocia rates, etc. The types of information that Dr. Susan is tracking is information that currently is mostly based on Persians and Siamese. The data is also old - it predates vaccines, blood types, etc. so it is possible the data on stillbirths, congenital defects and mortality rates may be skewed by those factors. Here are some of the numbers she presented:
| | Avg. Litter | Stillbirth (%) | Dystocia(1) (%) | Congential Defects (%) | Mortality Rate (%) |
| Research Catteries | 3.3 - 4.2 | 3.2 - 4.7 | | 1 - 10 | 10 - 17 |
| Pedigreed Catteries | 3.3 - 4.6 | 5.9 - 22.1 | 5.8 - 22.0 | 1 - 31 | 8 - 40 |
(1)difficult labor: oxytocin, c-section, having to help pull babies, etc.
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Dr. Susan indicated that she would like to do more breed specific studies, but has a bunch she is working on right now. Each project takes one year and needs a lot of breeders to get involved. If you would like to see some of the projects she is working on, go to catvet.homestead.com. This information requires dedication of the breeders, since each litter has to have specific information provided to get the correct numbers, and then follow up at 4 weeks and 6 months of age. Fortunately, the form used to gather the information is fairly easy to fill out and it is all on-line. When it comes time for the Selkirk Rex, she will let us know.
Dr. Susan also talked about flat-chest syndrome and limb contractures. If you have seen either of these defects, please let her know. With the limb contractures, they occur at birth, are seen in many breeds, can affect one or all limbs, both front and back, and there is often only one kitten with the problem. There is no treatment needed, usually for the hind legs, since once the kittens start attempting to walk, the problem corrects itself. Front legs may need splinting, since they don't correct as quickly as back legs. The cause appears to be a delay in development of supporting structures and ligaments, since if they were not present, the problem would not correct.
If you have the problem show up, Dr. Susan would like pictures and x-rays [especially x-rays] of the limbs at birth and as they age.
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| 10. | Devon Rex/Sphynx spasticity research continues. They have narrowed the candidate genes down to a handful of potentially affected muscle proteins. The presenter had a bit of a twinkle in his eye when he said this, so I have the feeling he is much closer than he is letting on (researchers have to be careful about disclosing too much before their papers get published). Good news here! It appears that this is limited to Devons and Sphynx that used Devons used as outcrosses.
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| 11. | Some breeds appear to be equally or less genetically diverse than the Havana Browns (including Birmans, Russian Blues, Siamese, Korats, Persians, and Turkish Angoras). These breeds should be closely watched for signs that this may be affecting the health of their breed. Norwegian Forest Cats and Abyssinians are amongst the MOST diverse at the loci tested, strangely enough. They can now take a sample of DNA and differentiate a Persian from a Siamese from an Aby from a JBT (for example) based on the markers they now have. Closely related breeds can't be sorted yet, though. Because hybrids and mutations have anywhere from a couple to many different breeds used they cannot be differentiated as easily. All of the breeds used in the study were "founder" or what CFA calls an "natural" breed.
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| 12. | Studies are being done to determine what species of wild cat(s) were used to create the domestic cat of today. Blood samples are needed from Egyptian Maus, Siberians, recently outcrossed Havana Browns, Servals, ALCs, and Jungle Cats to assist in studies 9 and 10.
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| 13. | Parentage testing is available to the cat fancy. This is also done as a part of the other studies to ascertain that offspring really are from the parents we say they are from. We have been wrong on multiple occasions!
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| 14. | The gene for mackeral vs. classic tabby is being investigated. A candidate gene for white spotting is being investigated (the KIT locus). The researcher had included spotted and broken mackeral as well as ticked tabby in his potential research project, but because of the various spotting patterns and inheritances, he agreed that limiting his current research to just the two major tabby patterns. BTW, this was given to him as a "slam-dunk" project - just find a commonality among mackerals or classics or spotteds, etc. and voila! Surprise!
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| 15. | Breed and color specific genes are being investigated in order to help the field of forensics. If a suspected criminal owns a chocolate point Cornish Rex and DNA found at a crime scene has the alleles for chocolate, pointed, and Cornish Rex, that can be used as evidence to prosecute the case.
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| 16. | Investigation into early-onset progressive retinal atrophy (PRA) in Persian cats continues. The identification of more blind cats is needed for this study. PRA in Persians appears to be an autosomal recessive. At the age of 4-5 weeks, the kittens have a loss of light reflex with dilated pupils. At 6-9 weeks, there are noticeably reduced retinal vessels, and increased reflectivity. At the age of 16 weeks, there is no response in behavioral test and loss of retinal blood vessels - since there is no longer any retinal tissue that needs nourishing with a blood supply.
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| 17. | Other future projects include the gene for tailessness in Manx, the munchkin gene, and the gene for Ojos Azules. Leslie asked me if we would be interested in having one of her students look for the Selkirk Rex curly gene. Of course, I said yes. Details will be forthcoming, but it will require families of cats (one or two unrelated cats won't help - need parents, siblings, offspring, etc. for several generations, so the "parent" factor can be taken out). It will also require accurate pedigrees of each of the cats, so start gathering all your information!
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It was great seeing quite a few Fanciershealth List members, including our own Dr. Susan, at this meeting. For the rest of you... you missed a GREAT opportunity for learning more about our cats and letting the research community learn more about us. They are considering making this an annual event. I suggested that Leslie consider holding one at the CFA Annual meeting in Reno, June 2006. Jean Grimm (Regional Director and Annual Coordinator) thinks it is a great idea, as do several other people I mentioned it to. So we can keep our fingers crossed!
For many of these projects, more cats are needed. Bucal swabs are needed of cats of the various colors/patterns discussed above, along with detailed information (and pedigrees, too, if possible) about the cat. If you would like to participate, contact Dr. Lyons at UCDavis (felinegenome@UCDavis.edu).
See YOU next year!!
--Lorraine
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